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    F07A11.5 Ribokinase [ Caenorhabditis elegans ]

    Gene ID: 174781, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F07A11.5
    Official Full Name
    Ribokinase
    Primary source
    WormBase:WBGene00008548
    Locus tag
    CELE_F07A11.5
    See related
    AllianceGenome:WB:WBGene00008548
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ATP binding activity; metal ion binding activity; and ribokinase activity. Predicted to be involved in D-ribose catabolic process and carbohydrate phosphorylation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human RBKS (ribokinase). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F07A11.5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    6
    Sequence:
    Chromosome: II; NC_003280.10 (11612300..11614391)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Ubiquitin carboxyl-terminal hydrolase;ubiquitinyl hydrolase 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Daf-12-interacting protein 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in D-ribose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in D-ribose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in carbohydrate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in phosphate-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Ribokinase
    NP_496483.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      11612300..11614391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064082.6 → NP_496483.2  Ribokinase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496483.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19133
      Conserved Domains (1) summary
      TIGR02152
      Location:12 → 306
      D_ribokin_bact; ribokinase
    Nucleotide Protein
    Heading Accession and Version

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