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    fipp-1 Pre-mRNA polyadenylation factor Fip1 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178835, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fipp-1
    Official Full Name
    Pre-mRNA polyadenylation factor Fip1 domain-containing protein
    Primary source
    WormBase:WBGene00017988
    Locus tag
    CELE_F32D1.9
    See related
    AllianceGenome:WB:WBGene00017988
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See fipp-1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (4371807..4373872)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Activin_recp domain-containing protein Neighboring gene GMP reductase Neighboring gene Negative Effect on Gut development Neighboring gene Protein lilliputian Neighboring gene BSD domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Spatiotemporal m(i)RNA Architecture and 3' UTR Regulation in the C. elegans Germline. Diag A, et al. Dev Cell, 2018 Dec 17. PMID 30416012
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mRNA cleavage and polyadenylation specificity factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Pre-mRNA polyadenylation factor Fip1 domain-containing protein
    NP_001317811.1
    • Confirmed by transcript evidence
    NP_504203.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4371807..4373872
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001330860.4 → NP_001317811.1  Pre-mRNA polyadenylation factor Fip1 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A164D3G3
      Conserved Domains (1) summary
      pfam05182
      Location:134 → 176
      Fip1; Fip1 motif

    2. NM_071802.6 → NP_504203.1  Pre-mRNA polyadenylation factor Fip1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504203.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16293
      Conserved Domains (1) summary
      pfam05182
      Location:134 → 176
      Fip1; Fip1 motif
    Nucleotide Protein
    Heading Accession and Version

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