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    LAMA5-AS1 LAMA5 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928158, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LAMA5-AS1provided by HGNC
    Official Full Name
    LAMA5 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40334
    See related
    Ensembl:ENSG00000228812 AllianceGenome:HGNC:40334
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in placenta (RPKM 2.5), skin (RPKM 1.6) and 24 other tissues See more
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    Genomic context

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    See LAMA5-AS1 in Genome Data Viewer
    Location:
    20q13.33
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62353010..62356480)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64148671..64152137)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (60928066..60931536)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene laminin subunit alpha 5 Neighboring gene microRNA 4758 Neighboring gene uncharacterized LOC124904946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18197 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60929780-60930720 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60930721-60931659 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60935576-60936276 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60936277-60936975 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60936976-60937675 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60937676-60938374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60939075-60939774 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60939775-60940474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60941173-60941872 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13109 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60943971-60944670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60946071-60946768 Neighboring gene uncharacterized LOC105372708 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60949451-60950054 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60950055-60950656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60953065-60953666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60956340-60957020 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:60961625-60962316 Neighboring gene RPS21 divergent transcript

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. Wistow G, et al. Mol Vis, 2002 Jun 15. PMID 12107413
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109922.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL354836, BM670160, BM700151

    2. NR_109923.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and uses an alternate splice site compared to variant 1.
      Source sequence(s)
      AL354836, BM670160, BQ188912
      Related
      ENST00000456721.5

    3. NR_109924.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice compared to variant 1.
      Source sequence(s)
      AL354836, BM670160, CD675432
      Related
      ENST00000478167.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      62353010..62356480
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      64148671..64152137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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