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    CG30048 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 246415, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG30048provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0050048
    Locus tag
    Dmel_CG30048
    See related
    AllianceGenome:FB:FBgn0050048
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG30048; Pkd1
    Summary
    Predicted to be involved in calcium ion transport. Predicted to be part of polycystin complex. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG30048 in Genome Data Viewer
    Location:
    49A2-49A2; 2-67 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (12394907..12399142)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (8282412..8286647)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Cuticular protein 49Ad Neighboring gene Odorant receptor 49a Neighboring gene Cuticular protein 49Ae Neighboring gene Cuticular protein 49Af

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural genetic variation in a dopamine receptor is associated with variation in female fertility in Drosophila melanogaster. Lyman RF, et al. Proc Biol Sci, 2023 Apr 12. PMID 37040806, Free PMC Article
    2. Drosophila melanogaster: a simple genetic model of kidney structure, function and disease. Dow JAT, et al. Nat Rev Nephrol, 2022 Jul. PMID 35411063
    3. Conserved chromosomal clustering of genes governed by chromatin regulators in Drosophila. Blanco E, et al. Genome Biol, 2008. PMID 18783608, Free PMC Article
    4. A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. Neely GG, et al. Cell, 2010 Apr 2. PMID 20371351, Free PMC Article
    5. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in calcium ion transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of polycystin complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG30048-PC
    CG30048-PD
    CG30048-PE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      12394907..12399142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001414072.1 → NP_001400986.1  uncharacterized protein Dmel_CG30048, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8Z0

    2. NM_165895.4 → NP_725155.4  uncharacterized protein Dmel_CG30048, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725155.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8Y9
      Conserved Domains (2) summary
      pfam02010
      Location:1 → 210
      REJ; REJ domain
      cl00011
      Location:760 → 860
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...

    3. NM_001414073.1 → NP_001401003.1  uncharacterized protein Dmel_CG30048, isoform E [Drosophila melanogaster]

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z8Y9 A1Z8Y9
    A1Z8Z0 A1Z8Z0

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