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    SsRbeta Signal sequence receptor beta [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39768, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SsRbetaprovided by FlyBase
    Official Full Name
    Signal sequence receptor betaprovided by FlyBase
    Primary source
    FLYBASE:FBgn0011016
    Locus tag
    Dmel_CG5474
    See related
    AllianceGenome:FB:FBgn0011016
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:Liang-1.1; BcDNA.LD10457; BcDNA:LD10457; CG5474; clone 1.1; Dmel\CG5474; l(3)s1939
    Summary
    Located in endomembrane system. Is expressed in adult head; adult heart; and organism. Orthologous to human SSR2 (signal sequence receptor subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See SsRbeta in Genome Data Viewer
    Location:
    72D9-72D9; 3-44 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (16129617..16130983)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (16122717..16124083)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene TBP-associated factor 4 Neighboring gene Strumpellin Neighboring gene Phosphoglucose mutase 1 Neighboring gene TRAPP subunit 20 Neighboring gene enhanced level of genomic instability 1 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The early developmental gene Semaphorin 5c contributes to olfactory behavior in adult Drosophila. Rollmann SM, et al. Genetics, 2007 Jun. PMID 17435226, Free PMC Article
    2. Identification of ER proteins involved in the functional organisation of the early secretory pathway in Drosophila cells by a targeted RNAi screen. Kondylis V, et al. PLoS One, 2011 Feb 23. PMID 21383842, Free PMC Article
    3. Preservation of genes involved in sterol metabolism in cholesterol auxotrophs: facts and hypotheses. Vinci G, et al. PLoS One, 2008 Aug 6. PMID 18682733, Free PMC Article
    4. An Efficient Screen for Cell-Intrinsic Factors Identifies the Chaperonin CCT and Multiple Conserved Mechanisms as Mediating Dendrite Morphogenesis. Wang YH, et al. Front Cell Neurosci, 2020. PMID 33100975, Free PMC Article
    5. Discriminant analysis to evaluate clustering of gene expression data. Méndez MA, et al. FEBS Lett, 2002 Jul 3. PMID 12095613

    See all (53) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    located_in endomembrane system HDA PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    signal sequence receptor beta
    Names
    CG5474-PA
    SsRbeta-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      16129617..16130983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_079379.3 → NP_524103.2  signal sequence receptor beta [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_524103.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U9P9, Q9VUZ0
      Related
      FBpp0075209
      Conserved Domains (1) summary
      pfam05753
      Location:9 → 186
      TRAP_beta; Translocon-associated protein beta (TRAPB)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VUZ0 Q9VUZ0

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