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    crabp2.L cellular retinoic acid binding protein 2 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 378522, updated on 4-Jan-2025

    Summary

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    Official Symbol
    crabp2.L
    Official Full Name
    cellular retinoic acid binding protein 2 L homeolog
    Primary source
    Xenbase:XB-GENE-6252659
    Locus tag
    XELAEV_18040535mg
    See related
    EnsemblRapid:ENSXLAG00005030486 AllianceGenome:Xenbase:XB-GENE-6252659
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    crabp; crabp2; xCRABP; crabp2-A; xCRABP-b
    Summary
    Predicted to enable retinal binding activity and retinol binding activity. Predicted to be located in cytoplasm. Is expressed in several structures, including appendage; mesenchyme; nervous system; pharyngeal arch; and urinary system. Orthologous to human CRABP2 (cellular retinoic acid binding protein 2). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See crabp2.L in Genome Data Viewer
    Location:
    chromosome: 8L
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (123559241..123573854)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (108715242..109124048)

    Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene methyltransferase like 25B L homeolog Neighboring gene interferon stimulated exonuclease gene 20kDa like 2 L homeolog Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene nestin L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Xenopus laevis cellular retinoic acid-binding protein: temporal and spatial expression pattern during early embryogenesis. Ho L, et al. Mech Dev, 1994 Jul. PMID 7947321
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC130992

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables retinal binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables retinol binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cellular retinoic acid-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      123559241..123573854
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041573541.1 → XP_041429475.1  cellular retinoic acid-binding protein 2

      UniProtKB/Swiss-Prot
      P50568, Q3KQ44
      UniProtKB/TrEMBL
      A0A1L8FCB0, A0A974CAU2
      Related
      ENSXLAP00005091176.1, ENSXLAT00005092856.1
      Conserved Domains (1) summary
      cd19461
      Location:3 → 138
      CRABP2; Cellular retinoic acid-binding protein 2

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001085780.1: Suppressed sequence

      Description
      NM_001085780.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P50568.2 GenPept UniProtKB/Swiss-Prot:P50568

    Gene LinkOut

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