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    Zmat1 zinc finger, matrin-type 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308654, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Zmat1provided by RGD
    Official Full Name
    zinc finger, matrin-type 1provided by RGD
    Primary source
    RGD:1565344
    See related
    EnsemblRapid:ENSRNOG00000024135 AllianceGenome:RGD:1565344
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565344
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Orthologous to human ZMAT1 (zinc finger matrin-type 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 40.1), Kidney (RPKM 31.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zmat1 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (102461621..102520818, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (98168388..98199415, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (105804603..105836410, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene nuclear RNA export factor 2 Neighboring gene ribosomal protein L27a, pseudogene 1 Neighboring gene ribosomal protein L18, pseudogene 16 Neighboring gene transcription elongation factor A like 6 Neighboring gene PRAME like, X-linked 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger matrin-type protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432970.1 → NP_001419899.1  zinc finger matrin-type protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    2. NM_001432971.1 → NP_001419900.1  zinc finger matrin-type protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A6IVI3, D3ZGI1

    3. NM_001432972.1 → NP_001419901.1  zinc finger matrin-type protein 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I6GK13

    4. NM_001432973.1 → NP_001419902.1  zinc finger matrin-type protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    5. NM_001432974.1 → NP_001419903.1  zinc finger matrin-type protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    6. NM_001432975.1 → NP_001419904.1  zinc finger matrin-type protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    7. NM_001432976.1 → NP_001419905.1  zinc finger matrin-type protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    8. NM_001432977.1 → NP_001419906.1  zinc finger matrin-type protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    9. NM_001432978.1 → NP_001419907.1  zinc finger matrin-type protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    10. NM_001432979.1 → NP_001419908.1  zinc finger matrin-type protein 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    11. NM_001432980.1 → NP_001419909.1  zinc finger matrin-type protein 1 isoform 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      102461621..102520818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063280393.1 → XP_063136463.1  zinc finger matrin-type protein 1 isoform X5

    2. XM_063280391.1 → XP_063136461.1  zinc finger matrin-type protein 1 isoform X1

      Related
      ENSRNOP00000100033.1, ENSRNOT00000125002.1

    3. XM_002730284.7 → XP_002730330.1  zinc finger matrin-type protein 1 isoform X3

      Related
      ENSRNOP00000050228.3, ENSRNOT00000042714.5

    4. XM_039100609.2 → XP_038956537.1  zinc finger matrin-type protein 1 isoform X5

    5. XM_039100604.2 → XP_038956532.1  zinc finger matrin-type protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6G6E3

    6. XM_008773457.4 → XP_008771679.1  zinc finger matrin-type protein 1 isoform X4

      See identical proteins and their annotated locations for XP_008771679.1

      UniProtKB/TrEMBL
      A0A8I6G6E3, A0A8I6GK13
      Related
      ENSRNOP00000092950.1, ENSRNOT00000111310.2

    7. XM_017602354.3 → XP_017457843.1  zinc finger matrin-type protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I6G6E3

    8. XM_039100603.2 → XP_038956531.1  zinc finger matrin-type protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6G6E3

    9. XM_063280392.1 → XP_063136462.1  zinc finger matrin-type protein 1 isoform X2

    10. XM_039100608.2 → XP_038956536.1  zinc finger matrin-type protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I6G6E3
    Nucleotide Protein Strain
    Heading Accession and Version

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