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    Prr36 proline rich 36 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501795, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Prr36provided by RGD
    Official Full Name
    proline rich 36provided by RGD
    Primary source
    RGD:1566084
    See related
    EnsemblRapid:ENSRNOG00000028892 AllianceGenome:RGD:1566084
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566084
    Summary
    Orthologous to human PRR36 (proline rich 36). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 12.0), Thymus (RPKM 10.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prr36 in Genome Data Viewer
    Location:
    12p12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (7358385..7365616, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (2560533..2567766, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2579154..2586126)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103690865 Neighboring gene ecotropic viral integration site 5-like Neighboring gene leucine rich repeat containing 8 VRAC subunit E Neighboring gene mitogen activated protein kinase kinase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    proline rich 36; proline-rich protein 36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431866.1 → NP_001418795.1  proline rich 36

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/TrEMBL
      D3ZUH5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      7358385..7365616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039089906.1 → XP_038945834.1  proline-rich protein 36

      UniProtKB/TrEMBL
      D3ZUH5
      Conserved Domains (2) summary
      PHA03247
      Location:9 → 436
      PHA03247; large tegument protein UL36; Provisional
      pfam15363
      Location:1035 → 1079
      DUF4596; Domain of unknown function (DUF4596)

    2. XM_039089905.1 → XP_038945833.1  proline-rich protein 36

      Related
      ENSRNOP00000063265.2, ENSRNOT00000068586.6
      Conserved Domains (2) summary
      PHA03247
      Location:9 → 436
      PHA03247; large tegument protein UL36; Provisional
      pfam15363
      Location:1035 → 1079
      DUF4596; Domain of unknown function (DUF4596)

    3. XM_039089904.2 → XP_038945832.1  proline-rich protein 36

      UniProtKB/TrEMBL
      D3ZUH5
      Conserved Domains (2) summary
      PHA03247
      Location:9 → 436
      PHA03247; large tegument protein UL36; Provisional
      pfam15363
      Location:1035 → 1079
      DUF4596; Domain of unknown function (DUF4596)

    4. XM_017598471.3 → XP_017453960.1  proline-rich protein 36

      UniProtKB/TrEMBL
      D3ZUH5
      Conserved Domains (2) summary
      PHA03247
      Location:9 → 436
      PHA03247; large tegument protein UL36; Provisional
      pfam15363
      Location:1035 → 1079
      DUF4596; Domain of unknown function (DUF4596)

    5. XM_063271834.1 → XP_063127904.1  proline-rich protein 36

      UniProtKB/TrEMBL
      D3ZUH5

    6. XM_008769018.4 → XP_008767240.1  proline-rich protein 36

      See identical proteins and their annotated locations for XP_008767240.1

      UniProtKB/TrEMBL
      D3ZUH5
      Conserved Domains (2) summary
      PHA03247
      Location:9 → 436
      PHA03247; large tegument protein UL36; Provisional
      pfam15363
      Location:1035 → 1079
      DUF4596; Domain of unknown function (DUF4596)
    Nucleotide Protein Strain
    Heading Accession and Version

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