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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001008843.2 → NP_001008843.1 RT1 class I, locus CE5 isoform 1 precursor
See identical proteins and their annotated locations for NP_001008843.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript and encodes the shorter isoform (1).
- Source sequence(s)
-
AJ537417, BC098841
- UniProtKB/TrEMBL
- A6KUT7, Q861Q0
- Conserved Domains (3) summary
-
- cd07698
Location:207 → 299
- IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- pfam06623
Location:343 → 369
- MHC_I_C; MHC_I C-terminus
-
NM_001033986.1 → NP_001029158.1 RT1 class I, locus CE5 isoform 2 precursor
See identical proteins and their annotated locations for NP_001029158.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region compared to variant 1. This results in a longer protein (isoform 2) compared to isoform 1.
- Source sequence(s)
-
BC098841
- UniProtKB/TrEMBL
- A6KUT7, F7FP91, Q95II0
- Conserved Domains (4) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- pfam06623
Location:349 → 372
- MHC_I_C; MHC_I C-terminus
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 299
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCr8
Genomic
-
NC_086038.1 Reference GRCr8
- Range
-
3407880..3484130 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_063279109.1 → XP_063135179.1 RT1 class I, locus CE5 isoform X3
- UniProtKB/TrEMBL
-
A6KUT7
-
XM_063279111.1 → XP_063135181.1 RT1 class I, locus CE5 isoform X4
- UniProtKB/TrEMBL
-
A6KUT7
-
XM_063279116.1 → XP_063135186.1 RT1 class I, locus CE5 isoform X14
- UniProtKB/TrEMBL
-
D3ZLE6
-
XM_039098665.2 → XP_038954593.1 RT1 class I, locus CE5 isoform X9
- Conserved Domains (5) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- pfam06623
Location:338 → 363
- MHC_I_C; MHC_I C-terminus
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 299
- Ig; Immunoglobulin domain
- cl41775
Location:299 → 341
- JMTM_Notch_APP; juxtamembrane and transmembrane (JMTM) domain found in Notch and APP family proteins
-
XM_063279114.1 → XP_063135184.1 RT1 class I, locus CE5 isoform X10
-
XM_063279108.1 → XP_063135178.1 RT1 class I, locus CE5 isoform X2
-
XM_063279107.1 → XP_063135177.1 RT1 class I, locus CE5 isoform X1
- UniProtKB/TrEMBL
-
A6KUT7
- Related
- ENSRNOP00000098077.2, ENSRNOT00000120395.2
-
XM_063279113.1 → XP_063135183.1 RT1 class I, locus CE5 isoform X8
-
XM_063279110.1 → XP_063135180.1 RT1 class I, locus CE5 isoform X4
- UniProtKB/TrEMBL
-
A6KUT7
-
XM_039098673.2 → XP_038954601.1 RT1 class I, locus CE5 isoform X14
- UniProtKB/TrEMBL
-
D3ZLE6
- Conserved Domains (4) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 299
- Ig; Immunoglobulin domain
- cl41775
Location:299 → 341
- JMTM_Notch_APP; juxtamembrane and transmembrane (JMTM) domain found in Notch and APP family proteins
-
XM_039098664.2 → XP_038954592.1 RT1 class I, locus CE5 isoform X10
- Conserved Domains (5) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- pfam06623
Location:338 → 363
- MHC_I_C; MHC_I C-terminus
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 299
- Ig; Immunoglobulin domain
- cl41775
Location:299 → 341
- JMTM_Notch_APP; juxtamembrane and transmembrane (JMTM) domain found in Notch and APP family proteins
-
XM_039098672.2 → XP_038954600.1 RT1 class I, locus CE5 isoform X13
- UniProtKB/TrEMBL
-
D3ZLE6
- Conserved Domains (4) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 299
- Ig; Immunoglobulin domain
- cl41775
Location:299 → 341
- JMTM_Notch_APP; juxtamembrane and transmembrane (JMTM) domain found in Notch and APP family proteins
-
XM_039098660.2 → XP_038954588.1 RT1 class I, locus CE5 isoform X5
- UniProtKB/TrEMBL
- A6KUT7, F7FP91, Q95II0
- Conserved Domains (4) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- pfam06623
Location:349 → 372
- MHC_I_C; MHC_I C-terminus
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 299
- Ig; Immunoglobulin domain
-
XM_039098663.2 → XP_038954591.1 RT1 class I, locus CE5 isoform X6
- Related
- ENSRNOP00000098050.2, ENSRNOT00000120364.2
- Conserved Domains (4) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- pfam06623
Location:345 → 370
- MHC_I_C; MHC_I C-terminus
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 301
- Ig; Immunoglobulin domain
-
XM_039098667.2 → XP_038954595.1 RT1 class I, locus CE5 isoform X11
- UniProtKB/TrEMBL
-
A6KUT7
- Conserved Domains (3) summary
-
- pfam00129
Location:25 → 203
- MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
- cd00096
Location:208 → 216
- Ig; Ig strand A [structural motif]
- cl11960
Location:205 → 299
- Ig; Immunoglobulin domain
-
XM_063279115.1 → XP_063135185.1 RT1 class I, locus CE5 isoform X12
- UniProtKB/TrEMBL
-
A6KUT7
-
XM_063279112.1 → XP_063135182.1 RT1 class I, locus CE5 isoform X7
- UniProtKB/TrEMBL
- A6KUT7, Q861Q0
RNA
-
XR_010060670.1 RNA Sequence
-
XR_010060674.1 RNA Sequence
-
XR_010060672.1 RNA Sequence
-
XR_010060669.1 RNA Sequence
-
XR_010060671.1 RNA Sequence
-
XR_010060673.1 RNA Sequence
-
XR_005497231.2 RNA Sequence
-
XR_005497232.2 RNA Sequence