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    ZNF236-DT ZNF236 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100131655, updated on 10-Dec-2024

    Summary

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    Official Symbol
    ZNF236-DTprovided by HGNC
    Official Full Name
    ZNF236 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:53779
    See related
    Ensembl:ENSG00000264278 AllianceGenome:HGNC:53779
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See ZNF236-DT in Genome Data Viewer
    Location:
    18q23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76794732..76822295, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (77023557..77051067, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74506688..74534251, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74468849-74469349 Neighboring gene cyclin D3 pseudogene 2 Neighboring gene uncharacterized LOC124904327 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:74503764-74503939 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9558 Neighboring gene RNA, U6 small nuclear 346, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13513 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13514 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13515 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9560 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9561 Neighboring gene zinc finger protein 236 Neighboring gene uncharacterized LOC105372214 Neighboring gene ribosomal protein L26 pseudogene 35

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040024.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC027575, BC032908
      Related
      ENST00000585258.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      76794732..76822295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      77023557..77051067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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