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    TPTE2P6 TPTE2 pseudogene 6 [ Homo sapiens (human) ]

    Gene ID: 374491, updated on 10-Dec-2024

    Summary

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    Official Symbol
    TPTE2P6provided by HGNC
    Official Full Name
    TPTE2 pseudogene 6provided by HGNC
    Primary source
    HGNC:HGNC:42644
    See related
    AllianceGenome:HGNC:42644
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 2.3), endometrium (RPKM 0.5) and 5 other tissues See more
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    Genomic context

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    See TPTE2P6 in Genome Data Viewer
    Location:
    13q12.12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (24580208..24597676)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (23788272..23805738)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (25154346..25171814)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370295 Neighboring gene Sharpr-MPRA regulatory region 11501 Neighboring gene ankyrin repeat domain-containing protein 26-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7478 Neighboring gene paraspeckle component 1 pseudogene 2 Neighboring gene uncharacterized LOC107984610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:25188083-25188583 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:25201760-25202598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:25205109-25205688 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5179 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:25256097-25256677 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:25256777-25257278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:25257279-25257778 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5180 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr13:25267931-25269130 Neighboring gene ATPase H+/K+ transporting non-gastric alpha2 subunit Neighboring gene RNY1 pseudogene 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • TPTE and PTEN homologous inositol lipid phosphatase pseudogene
    • transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002815.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137411, AL359538, BC045761, DN831683

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      24580208..24597676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      23788272..23805738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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