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    PEX5L-AS2 PEX5L antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 101928790, updated on 10-Dec-2024

    Summary

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    Official Symbol
    PEX5L-AS2provided by HGNC
    Official Full Name
    PEX5L antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:41252
    See related
    Ensembl:ENSG00000244302 AllianceGenome:HGNC:41252
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 6.8) See more
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    Genomic context

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    See PEX5L-AS2 in Genome Data Viewer
    Location:
    3q26.33
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (179898194..179921899)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (182701771..182725425)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (179615982..179639687)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:179370658-179371301 Neighboring gene ubiquitin specific peptidase 13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:179446047-179446626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:179446627-179447205 Neighboring gene uncharacterized LOC124909464 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20871 Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20872 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20873 Neighboring gene uncharacterized LOC124909463 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:179732143-179732642 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14925 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:179791123-179791788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:179796465-179796989 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:179819851-179820351 Neighboring gene uncharacterized LOC124909465

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • PEX5L antisense RNA 2 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110059.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC092939, BG186146, HY048179
      Related
      ENST00000462801.3

    2. NR_110060.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 5' most exon resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC092939, BG186146, HY052832

    3. NR_110061.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate 5' structure resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC092939, BG186146, HY015924

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      179898194..179921899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      182701771..182725425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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