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    sod1 superoxide dismutase Sod1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542128, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sod1
    Official Full Name
    superoxide dismutase Sod1
    Primary source
    PomBase:SPAC821.10c
    Locus tag
    SPOM_SPAC821.10C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See sod1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (1002838..1003600, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cell septum surface endo-1,3-beta-glucanase Eng1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The effect of superoxide dismutase deficiency on zinc toxicity in Schizosaccharomyces pombe. Tarhan C, et al. J Basic Microbiol, 2007 Dec. PMID 18072251
    2. Accelerated chronological aging of a mutant fission yeast deficient in both glutathione and superoxide dismutase having cu and zn as cofactors and its enhancement by sir2 deficiency. Mutoh N, et al. Biosci Biotechnol Biochem, 2007 Nov. PMID 17986764
    3. Inactivation of homocitrate synthase causes lysine auxotrophy in copper/zinc-containing superoxide dismutase-deficient yeast Schizosaccharomyces pombe. Kwon ES, et al. J Biol Chem, 2006 Jan 20. PMID 16299000
    4. The peroxiredoxin Tpx1 is essential as a H2O2 scavenger during aerobic growth in fission yeast. Jara M, et al. Mol Biol Cell, 2007 Jun. PMID 17409354, Free PMC Article
    5. A large complex mediated by Moc1, Moc2 and Cpc2 regulates sexual differentiation in fission yeast. Paul SK, et al. FEBS J, 2009 Sep. PMID 19682301

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The fission yeast Schizosaccharomyces pombe lacking copper/zinc-containing superoxide dismutase is auxotrophic for lysine.
      Title: Inactivation of homocitrate synthase causes lysine auxotrophy in copper/zinc-containing superoxide dismutase-deficient yeast Schizosaccharomyces pombe.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables copper ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables superoxide dismutase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables superoxide dismutase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell redox homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intracellular copper ion homeostasis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in intracellular zinc ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in removal of superoxide radicals IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in mitochondrial intermembrane space ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    superoxide dismutase Sod1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1002838..1003600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018561.3 → NP_593163.1  superoxide dismutase Sod1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593163.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P28758
      Conserved Domains (1) summary
      pfam00080
      Location:13 → 150
      Sod_Cu; Copper/zinc superoxide dismutase (SODC)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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