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    atm1 ABC family Fe transporter Atm1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542779, updated on 18-Sep-2024

    Summary

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    Official Symbol
    atm1
    Official Full Name
    ABC family Fe transporter Atm1
    Primary source
    PomBase:SPAC15A10.01
    Locus tag
    SPOM_SPAC15A10.01
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPAC8C9.18
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    Genomic context

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    See atm1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (3675079..3677834)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene V-type ATPase inhibitor and disassembly protein in response to oxidative stress Oxr1 Neighboring gene ncRNA Neighboring gene DASH complex subunit Spc34 Neighboring gene ncRNA Neighboring gene SAGA complex/transcription factor TFIID complex subunit A Taf12 Neighboring gene ncRNA Neighboring gene DNA repair protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mitochondrial ABC transporter Atm1p is required for protection against oxidative stress and vacuolar functions in Schizosaccharomyces pombe. Iwaki T, et al. Biosci Biotechnol Biochem, 2005 Nov. PMID 16306692
    2. The role of mitochondria and the CIA machinery in the maturation of cytosolic and nuclear iron-sulfur proteins. Lill R, et al. Eur J Cell Biol, 2015 Jul-Sep. PMID 26099175
    3. Mitochondria export iron-sulfur and sulfur intermediates to the cytoplasm for iron-sulfur cluster assembly and tRNA thiolation in yeast. Pandey AK, et al. J Biol Chem, 2019 Jun 14. PMID 31040179, Free PMC Article
    4. A survey of all 11 ABC transporters in fission yeast: two novel ABC transporters are required for red pigment accumulation in a Schizosaccharomyces pombe adenine biosynthetic mutant. Iwaki T, et al. Microbiology (Reading), 2006 Aug. PMID 16849797
    5. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. fission yeast Atm1p was not only involved in protection against oxidative stress, but also played a role in fluid-phase endocytosis and vacuolar fusion
      Title: Mitochondrial ABC transporter Atm1p is required for protection against oxidative stress and vacuolar functions in Schizosaccharomyces pombe.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ABC-type iron-sulfur cluster transporter activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables ATP binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular iron ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in iron-sulfur cluster assembly ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    involved_in iron-sulfur cluster export from the mitochondrion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrial inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC family Fe transporter Atm1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      3675079..3677834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019711.3 → NP_594288.2  ABC family Fe transporter Atm1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594288.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13721, O14286
      Conserved Domains (3) summary
      cd03253
      Location:443 → 680
      ABCC_ATM1_transporter; ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C
      COG5265
      Location:182 → 677
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam00664
      Location:123 → 397
      ABC_membrane; ABC transporter transmembrane region
    Nucleotide Protein
    Heading Accession and Version

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