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    nop56 U3 snoRNP protein Nop56 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541087, updated on 18-Sep-2024

    Summary

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    Official Symbol
    nop56
    Official Full Name
    U3 snoRNP protein Nop56
    Primary source
    PomBase:SPBC646.10c
    Locus tag
    SPOM_SPBC646.10C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See nop56 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (940703..942373, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation initiation factor Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GTPase-activating protein Gap1 Neighboring gene chaperonin-containing T-complex zeta subunit Cct6 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Stc1: a critical link between RNAi and chromatin modification required for heterochromatin integrity. Bayne EH, et al. Cell, 2010 Mar 5. PMID 20211136, Free PMC Article
    2. The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection. Lemay JF, et al. Genes Dev, 2016 Jul 1. PMID 27401558, Free PMC Article
    3. Poly(A) tail-mediated gene regulation by opposing roles of Nab2 and Pab2 nuclear poly(A)-binding proteins in pre-mRNA decay. Grenier St-Sauveur V, et al. Mol Cell Biol, 2013 Dec. PMID 24081329, Free PMC Article
    4. Proteome-wide search for PP2A substrates in fission yeast. Bernal M, et al. Proteomics, 2014 Jun. PMID 24634168
    5. A novel histone deacetylase complex in the control of transcription and genome stability. Zilio N, et al. Mol Cell Biol, 2014 Sep 15. PMID 25002536, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in snoRNA guided rRNA 2'-O-methylation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus HDA PubMed 
    is_active_in nucleus HDA PubMed 
    part_of small nuclear ribonucleoprotein complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of small-subunit processome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U3 snoRNP protein Nop56

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      940703..942373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021276.3 → NP_595368.1  U3 snoRNP protein Nop56 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595368.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94514
      Conserved Domains (3) summary
      smart00931
      Location:170 → 221
      NOSIC; NOSIC (NUC001) domain
      COG1498
      Location:46 → 416
      SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
      pfam08156
      Location:4 → 69
      NOP5NT; NOP5NT (NUC127) domain
    Nucleotide Protein
    Heading Accession and Version

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