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    rps-4 Small ribosomal subunit protein eS4 [ Caenorhabditis elegans ]

    Gene ID: 177481, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rps-4
    Official Full Name
    Small ribosomal subunit protein eS4
    Primary source
    WormBase:WBGene00004473
    Locus tag
    CELE_Y43B11AR.4
    See related
    AllianceGenome:WB:WBGene00004473
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in several structures, including hypodermis; intestine; nervous system; pharynx; and reproductive system. Orthologous to human RPS4X (ribosomal protein S4 X-linked); RPS4Y1 (ribosomal protein S4 Y-linked 1); and RPS4Y2 (ribosomal protein S4 Y-linked 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rps-4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (7083696..7084682, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene MS Related Protein Neighboring gene TruB_N domain-containing protein Neighboring gene ncRNA Neighboring gene Vinculin Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Asymmetric Arginine Dimethylation Modulates Mitochondrial Energy Metabolism and Homeostasis in Caenorhabditis elegans. Sha L, et al. Mol Cell Biol, 2017 Mar 15. PMID 27994012, Free PMC Article
    2. SUMOylation of the small GTPase ARL-13 promotes ciliary targeting of sensory receptors. Li Y, et al. J Cell Biol, 2012 Nov 12. PMID 23128241, Free PMC Article
    3. C. elegans STI-1, the homolog of Sti1/Hop, is involved in aging and stress response. Song HO, et al. J Mol Biol, 2009 Jul 24. PMID 19467242
    4. High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. Hunt-Newbury R, et al. PLoS Biol, 2007 Sep. PMID 17850180, Free PMC Article
    5. Caenorhabditis elegans operons: form and function. Blumenthal T, et al. Nat Rev Genet, 2003 Feb. PMID 12560808

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Small ribosomal subunit protein eS4
    NP_501103.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7083696..7084682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068702.8 → NP_501103.1  Small ribosomal subunit protein eS4 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501103.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9N3X2
      Conserved Domains (5) summary
      PLN00036
      Location:2 → 256
      PLN00036; 40S ribosomal protein S4; Provisional
      cd06087
      Location:174 → 228
      KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
      pfam00900
      Location:94 → 168
      Ribosomal_S4e; Ribosomal family S4e
      pfam08071
      Location:2 → 38
      RS4NT; RS4NT (NUC023) domain
      pfam16121
      Location:211 → 258
      40S_S4_C; 40S ribosomal protein S4 C-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9N3X2.1

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