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    Y53G8AM.8 HTH CENPB-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175430, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Y53G8AM.8
    Official Full Name
    HTH CENPB-type domain-containing protein
    Primary source
    WormBase:WBGene00021808
    Locus tag
    CELE_Y53G8AM.8
    See related
    AllianceGenome:WB:WBGene00021808
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Y53G8AM.8 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (3267186..3278710, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene RING-type domain-containing protein Neighboring gene MFS domain-containing protein;Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene Mitochondrial ATP synthase regulatory component factor B Neighboring gene SAP domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans. Weng C, et al. Genes Dev, 2019 Jan 1. PMID 30567997, Free PMC Article
    2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    HTH CENPB-type domain-containing protein
    NP_001379375.1
    • Confirmed by transcript evidence
    NP_497682.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      3267186..3278710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065281.7 → NP_497682.3  HTH CENPB-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8D9N0J4
      Conserved Domains (1) summary
      smart00674
      Location:607 → 671
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases

    2. NM_001393303.1 → NP_001379375.1  HTH CENPB-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7R9XLQ2
      Conserved Domains (1) summary
      smart00674
      Location:10 → 74
      CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    Nucleotide Protein
    Heading Accession and Version

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