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    attf-6 AT hook Transcription Factor family [ Caenorhabditis elegans ]

    Gene ID: 173148, updated on 9-Dec-2024

    Summary

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    Official Symbol
    attf-6
    Official Full Name
    AT hook Transcription Factor family
    Primary source
    WormBase:WBGene00012474
    Locus tag
    CELE_Y18D10A.1
    See related
    AllianceGenome:WB:WBGene00012474
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in nucleus. Is expressed in head muscle; head neurons; intestine; pharynx; and ventral nerve cord. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See attf-6 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    15
    Sequence:
    Chromosome: I; NC_003279.8 (12787943..12806581, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene SPK domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Gamma-interferon-inducible lysosomal thiol reductase Neighboring gene NAD(P)H-hydrate epimerase Neighboring gene Uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AT hook Transcription Factor family
    NP_871800.1
    • Product from WormBase gene class attf;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      12787943..12806581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_182000.6 → NP_871800.1  AT hook Transcription Factor family [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_871800.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XW25
      Conserved Domains (2) summary
      TIGR01612
      Location:20 → 223
      235kDa-fam; reticulocyte binding/rhoptry protein
      PHA03247
      Location:735 → 1080
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein
    Heading Accession and Version

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