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    cec-5 Chromo domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177537, updated on 9-Dec-2024

    Summary

    Official Symbol
    cec-5
    Official Full Name
    Chromo domain-containing protein
    Primary source
    WormBase:WBGene00017993
    Locus tag
    CELE_F32E10.6
    See related
    AllianceGenome:WB:WBGene00017993
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable methylated histone binding activity. Predicted to be involved in chromosome attachment to the nuclear envelope and regulation of gene expression. Predicted to be active in nuclear inner membrane. Is expressed in head; midbody; and tail. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See cec-5 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (7578506..7580112, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Tudor domain-containing protein Neighboring gene Chromo domain-containing protein cec-4 Neighboring gene NUC153 domain-containing protein Neighboring gene Protein clarinet Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables methylated histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in chromosome attachment to the nuclear envelope IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in chromosome attachment to the nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nuclear inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    Chromo domain-containing protein
    NP_001370694.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7578506..7580112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383124.2NP_001370694.1  Chromo domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19973
      Conserved Domains (1) summary
      cl28914
      Location:115167
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains