U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C16A11.5 FRIGIDA-like protein;PX domain-containing protein;RING-type domain-containing protein;Uncharacterized protein;Z1 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182650, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C16A11.5
    Official Full Name
    FRIGIDA-like protein;PX domain-containing protein;RING-type domain-containing protein;Uncharacterized protein;Z1 domain-containing protein
    Primary source
    WormBase:WBGene00015818
    Locus tag
    CELE_C16A11.5
    See related
    AllianceGenome:WB:WBGene00015818
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See C16A11.5 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    12
    Sequence:
    Chromosome: II; NC_003280.10 (4223305..4226338)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene UNC93-like protein MFSD11 Neighboring gene UNC93-like protein MFSD11 Neighboring gene SPK domain-containing protein Neighboring gene SPK domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    FRIGIDA-like protein;PX domain-containing protein;RING-type domain-containing protein;Uncharacterized protein;Z1 domain-containing protein
    NP_001338808.1
    • Confirmed by transcript evidence
    NP_001338811.1
    • Confirmed by transcript evidence
    NP_001368647.1
    • Confirmed by transcript evidence
    NP_001370971.1
    • Confirmed by transcript evidence
    NP_494743.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      4223305..4226338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001351903.3 → NP_001338808.1  PX domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RC39
      Conserved Domains (1) summary
      cl25732
      Location:206 → 410
      SMC_N; RecF/RecN/SMC N terminal domain

    2. NM_062342.6 → NP_494743.3  FRIGIDA-like protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RC32
      Conserved Domains (1) summary
      cl25732
      Location:241 → 444
      SMC_N; RecF/RecN/SMC N terminal domain

    3. NM_001351900.3 → NP_001338811.1  LOW QUALITY PROTEIN: RING-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RBK7
      Conserved Domains (1) summary
      cl25732
      Location:414 → 617
      SMC_N; RecF/RecN/SMC N terminal domain

    4. NM_001383817.2 → NP_001370971.1  Z1 domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RBQ2

    5. NM_001381386.1 → NP_001368647.1  Uncharacterized protein CELE_C16A11.5 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1X7RBJ4
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools