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    CG5886 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43125, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5886provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039379
    Locus tag
    Dmel_CG5886
    See related
    AllianceGenome:FB:FBgn0039379
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5886
    Summary
    Predicted to enable syntaxin binding activity. Is expressed in several structures, including dorsal pharyngeal muscle primordium; larval muscle cell; larval muscle system; mesoderm; and somatic muscle primordium. Orthologous to human TXLNA (taxilin alpha); TXLNB (taxilin beta); and TXLNG (taxilin gamma). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5886 in Genome Data Viewer
    Location:
    96F3-96F4; 3-89 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (25851632..25853989)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (21677354..21679711)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45657 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Tetraspanin 96F

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Drosophila Larp associates with poly(A)-binding protein and is required for male fertility and syncytial embryo development. Blagden SP, et al. Dev Biol, 2009 Oct 1. PMID 19631203
    2. Mes2, a MADF-containing transcription factor essential for Drosophila development. Zimmermann G, et al. Dev Dyn, 2006 Dec. PMID 17029287
    3. Mapping Dmef2-binding regulatory modules by using a ChIP-enriched in silico targets approach. Junion G, et al. Proc Natl Acad Sci U S A, 2005 Dec 20. PMID 16339902, Free PMC Article
    4. Seizure suppression through manipulating splicing of a voltage-gated sodium channel. Lin WH, et al. Brain, 2015 Apr. PMID 25681415, Free PMC Article
    5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5886-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      25851632..25853989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143178.2 → NP_651435.1  uncharacterized protein Dmel_CG5886 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651435.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VBL3
      Related
      FBpp0084281
      Conserved Domains (1) summary
      pfam09728
      Location:22 → 328
      Taxilin; Myosin-like coiled-coil protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VBL3 Q9VBL3

    Gene LinkOut

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