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    Rpl10l ribosomal protein L10-like [ Mus musculus (house mouse) ]

    Gene ID: 238217, updated on 27-Nov-2024

    Summary

    Official Symbol
    Rpl10lprovided by MGI
    Official Full Name
    ribosomal protein L10-likeprovided by MGI
    Primary source
    MGI:MGI:3647985
    See related
    Ensembl:ENSMUSG00000060499 AllianceGenome:MGI:3647985
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG238217
    Summary
    A structural constituent of ribosome. Involved in male meiosis I; ribosomal large subunit assembly; and spermatogenesis. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in spermatogenic failure 63. Orthologous to human RPL10L (ribosomal protein L10 like). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See Rpl10l in Genome Data Viewer
    Location:
    12 C2; 12 27.44 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (66330153..66331175, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (66283379..66284401, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51979 Neighboring gene STARR-seq mESC enhancer starr_32336 Neighboring gene STARR-seq mESC enhancer starr_32337 Neighboring gene STARR-seq mESC enhancer starr_32338 Neighboring gene STARR-seq mESC enhancer starr_32339 Neighboring gene STARR-seq mESC enhancer starr_32340 Neighboring gene GC-rich promoter binding protein 1-like 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_32341 Neighboring gene predicted gene, 51994 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 2

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables structural constituent of ribosome IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in male meiosis I IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in male meiosis I IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in ribosomal large subunit assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
     
    part_of cytosolic large ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in ribosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    large ribosomal subunit protein uL16-like
    Names
    60S ribosomal protein L10-like
    NP_001156405.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162933.1NP_001156405.1  large ribosomal subunit protein uL16-like

      See identical proteins and their annotated locations for NP_001156405.1

      Status: VALIDATED

      Source sequence(s)
      BC052145
      Consensus CDS
      CCDS49076.1
      UniProtKB/Swiss-Prot
      P86048
      UniProtKB/TrEMBL
      Q3THJ6
      Related
      ENSMUSP00000100795.3, ENSMUST00000081908.8
      Conserved Domains (1) summary
      PTZ00173
      Location:1209
      PTZ00173; 60S ribosomal protein L10; Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      66330153..66331175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)