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    CG11828 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43416, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11828provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0039616
    Locus tag
    Dmel_CG11828
    See related
    AllianceGenome:FB:FBgn0039616
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11828
    Summary
    Predicted to enable procollagen-proline 4-dioxygenase activity. Involved in sexual reproduction. Predicted to be active in endoplasmic reticulum. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11828 in Genome Data Viewer
    Location:
    98F2-98F2; 3-97 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (28923044..28925086)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (24748766..24750808)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Neprilysin-like 21 Neighboring gene Darkener of apricot Neighboring gene Dpr-interacting protein gamma Neighboring gene long non-coding RNA:CR45669 Neighboring gene waterproof Neighboring gene mir-4947 stem loop

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional genome annotation of Drosophila seminal fluid proteins using transcriptional genetic networks. Ayroles JF, et al. Genet Res (Camb), 2011 Dec. PMID 22189604, Free PMC Article
    2. Context-dependent genetic architecture of Drosophila life span. Huang W, et al. PLoS Biol, 2020 Mar. PMID 32134916, Free PMC Article
    3. The extracellular matrix phenome across species. Statzer C, et al. Matrix Biol Plus, 2020 Nov. PMID 33543035, Free PMC Article
    4. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
    5. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables procollagen-proline 4-dioxygenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables procollagen-proline 4-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in sexual reproduction IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11828-PD
    NP_651648.5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      28923044..28925086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143391.4 → NP_651648.5  uncharacterized protein Dmel_CG11828 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651648.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VAR7
      Conserved Domains (2) summary
      smart00702
      Location:287 → 445
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
      pfam08336
      Location:1 → 126
      P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VAR7 Q9VAR7

    Gene LinkOut

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