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    LOC105374060 uncharacterized LOC105374060 [ Homo sapiens (human) ]

    Gene ID: 105374060, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105374060
    Gene description
    uncharacterized LOC105374060
    See related
    Ensembl:ENSG00000243276
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105374060 in Genome Data Viewer
    Location:
    3q13.32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (118508411..118810833, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (121228480..121530592, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (118227258..118529680, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124909416 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20288 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20289 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:118198933-118199550 Neighboring gene uncharacterized LOC105374058 Neighboring gene MPRA-validated peak4778 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20290 Neighboring gene uncharacterized LOC101926968 Neighboring gene NANOG hESC enhancer GRCh37_chr3:118452301-118452802 Neighboring gene uncharacterized LOC124909417 Neighboring gene uncharacterized LOC105374059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20293 Neighboring gene IGSF11 antisense RNA 1 Neighboring gene immunoglobulin superfamily member 11 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118725480-118726080 Neighboring gene MPRA-validated peak4780 silencer Neighboring gene MPRA-validated peak4781 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14624 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118763719-118764299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:118764300-118764879 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:118839208-118839745 Neighboring gene Sharpr-MPRA regulatory region 3599 Neighboring gene testis expressed 55

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135547.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX092438, EU250752
      Related
      ENST00000833988.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      118508411..118810833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      121228480..121530592 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials