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    LINC01991 long intergenic non-protein coding RNA 1991 [ Homo sapiens (human) ]

    Gene ID: 105374266, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01991provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1991provided by HGNC
    Primary source
    HGNC:HGNC:52823
    See related
    AllianceGenome:HGNC:52823
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 1.9) and appendix (RPKM 0.5) See more
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    Genomic context

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    See LINC01991 in Genome Data Viewer
    Location:
    3q27.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (187958775..187976407, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (190776298..190793940, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (187676563..187694195, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:187619577-187620078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20972 Neighboring gene uncharacterized LOC105374265 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20973 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20974 Neighboring gene Sharpr-MPRA regulatory region 2895 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:187707584-187708117 Neighboring gene uncharacterized LOC107986166 Neighboring gene Sharpr-MPRA regulatory region 1686 Neighboring gene Sharpr-MPRA regulatory region 10187 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:187769983-187770955 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:187870480-187871380 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14995 Neighboring gene LPP antisense RNA 2 Neighboring gene LIM domain containing preferred translocation partner in lipoma

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135537.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068295, BX403058

    2. NR_135538.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA255943, AC068295, BX364319

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      187958775..187976407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      190776298..190793940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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