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    H2bc15 H2B clustered histone 15 [ Mus musculus (house mouse) ]

    Gene ID: 319187, updated on 9-Dec-2024

    Summary

    Official Symbol
    H2bc15provided by MGI
    Official Full Name
    H2B clustered histone 15provided by MGI
    Primary source
    MGI:MGI:2448407
    See related
    Ensembl:ENSMUSG00000095217 AllianceGenome:MGI:2448407
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    H2bc7; H2bc11; H2bc13; Hist1h2bn
    Summary
    Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H2B family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. [provided by RefSeq, Aug 2015]
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    Genomic context

    See H2bc15 in Genome Data Viewer
    Location:
    13 A3.1; 13 7.95 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (21938246..21938723)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (21754076..21754553)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_33862 Neighboring gene H4 clustered histone 12 Neighboring gene H2A clustered histone 15 Neighboring gene STARR-seq mESC enhancer starr_33863 Neighboring gene predicted gene 11274 Neighboring gene STARR-positive B cell enhancer ABC_E8510 Neighboring gene H1.5 linker histone, cluster member

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    histone H2B type 1-F/J/L
    Names
    H2B 291A
    histone 1, H2bn
    histone cluster 1, H2bn

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178201.3NP_835508.1  histone H2B type 1-F/J/L

      See identical proteins and their annotated locations for NP_835508.1

      Status: REVIEWED

      Source sequence(s)
      AL589651
      Consensus CDS
      CCDS26294.1
      UniProtKB/Swiss-Prot
      P10853, Q5SZZ3
      UniProtKB/TrEMBL
      A0JLV3
      Related
      ENSMUSP00000089301.3, ENSMUST00000091709.3
      Conserved Domains (1) summary
      smart00427
      Location:28124
      H2B; Histone H2B

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      21938246..21938723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)