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    RNPC3-DT RNPC3 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101928436, updated on 10-Dec-2024

    Summary

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    Official Symbol
    RNPC3-DTprovided by HGNC
    Official Full Name
    RNPC3 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55855
    See related
    Ensembl:ENSG00000224613 AllianceGenome:HGNC:55855
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See RNPC3-DT in Genome Data Viewer
    Location:
    1p21.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (103416980..103525508, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (103265909..103374433, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (103959602..104068130, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene collagen type XI alpha 1 chain Neighboring gene superoxide dismutase 2 pseudogene 1 Neighboring gene uncharacterized LOC124904593 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:103698107-103698264 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1412 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1413 Neighboring gene RN7SK pseudogene 285 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:104100112-104100330 Neighboring gene RNA binding region (RNP1, RRM) containing 3 Neighboring gene actin gamma 1 pseudogene 4 Neighboring gene amylase alpha 2B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168319.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC095032
      Related
      ENST00000444810.6

    2. NR_168320.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC095032
      Related
      ENST00000668150.2

    3. NR_168321.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC095032
      Related
      ENST00000836814.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      103416980..103525508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      103265909..103374433 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001286997.2: Suppressed sequence

      Description
      NM_001286997.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_001347929.1: Suppressed sequence

      Description
      NM_001347929.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    3. NM_001347930.1: Suppressed sequence

      Description
      NM_001347930.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

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