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    LOC101927434 uncharacterized LOC101927434 [ Homo sapiens (human) ]

    Gene ID: 101927434, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101927434
    Gene description
    uncharacterized LOC101927434
    See related
    Ensembl:ENSG00000234953
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101927434 in Genome Data Viewer
    Location:
    1p31.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (81513880..81557702, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (81351439..81395272, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (81979565..82023387, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor L2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1240 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene 14 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:81923876-81924376 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:81935555-81936062 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:81936063-81936570 Neighboring gene Sharpr-MPRA regulatory region 8606 Neighboring gene ARID3B pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:82009398-82010005 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:82013019-82013798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1007 Neighboring gene mediator complex subunit 28 pseudogene 8 Neighboring gene ribosomal protein S20 pseudogene 7 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:82147966-82148534 Neighboring gene ST13, Hsp70 interacting protein pseudogene 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125943.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX092247
      Related
      ENST00000443939.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      81513880..81557702 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      81351439..81395272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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