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    LINC01262 long intergenic non-protein coding RNA 1262 [ Homo sapiens (human) ]

    Gene ID: 101928971, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01262provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1262provided by HGNC
    Primary source
    HGNC:HGNC:50275
    See related
    Ensembl:ENSG00000250739 AllianceGenome:HGNC:50275
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_l2_00021807
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01262 in Genome Data Viewer
    Location:
    4q35.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (189659606..189661486)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (193019451..193021331)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (190580760..190582640)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:190400698-190401256 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:190405217-190405972 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:190405973-190406728 Neighboring gene heat shock protein 90 alpha family class A member 4, pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190471799-190472998 Neighboring gene uncharacterized LOC105377615 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:190523074-190524273 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190606699-190607898 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190608412-190609611 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:190615457-190616656 Neighboring gene uncharacterized LOC105377616 Neighboring gene RNA, U1 small nuclear 51, pseudogene Neighboring gene uncharacterized LOC124900882 Neighboring gene FRG1 divergent transcript

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing. Soreq L, et al. PLoS Comput Biol, 2014 Mar. PMID 24651478, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121679.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC018687
      Related
      ENST00000513681.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      189659606..189661486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_3

    Genomic

    1. NT_187679.1 Reference GRCh38.p14 ALT_REF_LOCI_3

      Range
      307218..309097
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      193019451..193021331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials