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    LOC105369213 uncharacterized LOC105369213 [ Homo sapiens (human) ]

    Gene ID: 105369213, updated on 22-Oct-2024

    Summary

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    Gene symbol
    LOC105369213
    Gene description
    uncharacterized LOC105369213
    See related
    Ensembl:ENSG00000197943
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in lymph node (RPKM 1.2), bone marrow (RPKM 0.8) and 7 other tissues See more
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    Genomic context

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    See LOC105369213 in Genome Data Viewer
    Location:
    16q23.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (81739041..81777353)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (87801375..87841184)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (81772646..81810958)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene c-Maf inducing protein Neighboring gene uncharacterized LOC105371362 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81667666-81668506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81666826-81667665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81678346-81679052 Neighboring gene Sharpr-MPRA regulatory region 7704 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11196 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81686310-81687034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81687035-81687760 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81695233-81696130 Neighboring gene uncharacterized LOC100129617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81716567-81717362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81719349-81720088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81720089-81720826 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81724705-81725344 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:81738285-81738786 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81745144-81745826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81747191-81747871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81746509-81747190 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:81750745-81750968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11197 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11198 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11199 Neighboring gene Sharpr-MPRA regulatory region 4528 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:81758203-81758451 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:81770025-81770957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11200 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81772148-81772930 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81779157-81779776 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:81780739-81780931 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11203 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81786280-81786887 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81785671-81786279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11204 Neighboring gene Sharpr-MPRA regulatory region 4151 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7761 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7763 Neighboring gene Sharpr-MPRA regulatory region 14941 Neighboring gene phospholipase C gamma 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11206 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11208 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11209 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11210 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11212 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11214 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11213 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11215 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11220 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11221 Neighboring gene uncharacterized LOC124903731 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81864849-81865430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:81865431-81866012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11223 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:81933783-81934284 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:81946417-81946916 Neighboring gene RN7SK pseudogene 176

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Potential readthrough

    Included gene: PLCG2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_189577.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524
      Related
      ENST00000566191.5

    2. NR_189578.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524

    3. NR_189579.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524
      Related
      ENST00000563954.6

    4. NR_189580.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524
      Related
      ENST00000697597.1

    5. NR_189581.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524

    6. NR_189582.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524

    7. NR_189583.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524
      Related
      ENST00000697599.1

    8. NR_189584.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099524

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      81739041..81777353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      87801375..87841184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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