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    VPS33B-DT VPS33B divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101926911, updated on 10-Dec-2024

    Summary

    Official Symbol
    VPS33B-DTprovided by HGNC
    Official Full Name
    VPS33B divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:51413
    See related
    Ensembl:ENSG00000214432 AllianceGenome:HGNC:51413
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See VPS33B-DT in Genome Data Viewer
    Location:
    15q26.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (91022622..91031139)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (88782210..88790726)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (91565852..91574369)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903556 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:91537939-91538805 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:91547812-91547974 Neighboring gene uncharacterized LOC105370970 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:91564908-91565524 Neighboring gene VPS33B late endosome and lysosome associated Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91586547-91587048 Neighboring gene golgin A2 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:91642723-91643264 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91653317-91653843 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:91653844-91654369 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:91656268-91656428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10108 Neighboring gene synaptic vesicle glycoprotein 2B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10109 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:91698560-91699759 Neighboring gene uncharacterized LOC105370972

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110104.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC068831, AK055351, BU634216
      Related
      ENST00000501381.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      91022622..91031139
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      88782210..88790726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)