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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009008.1 RefSeqGene
- Range
-
4485..44229
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_253
mRNA and Protein(s)
-
NM_001136472.2 → NP_001129944.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform 1
See identical proteins and their annotated locations for NP_001129944.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has an alternate 5' UTR exon, as compared to variant 1. Variants 1 and 2 encode the same isoform 1.
- Source sequence(s)
-
AA625937, AB034747, AK314519
- Consensus CDS
-
CCDS32386.1
- UniProtKB/Swiss-Prot
- D3DUG1, G5E9K0, Q05DW0, Q99732, Q9C0L6
- UniProtKB/TrEMBL
-
I3L3U8
- Related
- ENSP00000483114.1, ENST00000622633.5
- Conserved Domains (1) summary
-
- pfam10601
Location:91 → 157
- zf-LITAF-like; LITAF-like zinc ribbon domain
-
NM_001136473.1 → NP_001129945.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform 2
See identical proteins and their annotated locations for NP_001129945.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has an alternate 5' UTR exon and an additional exon in the 3' region, as compared to variant 1. The resulting isoform (2) has a different and shorter C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AA625937, AB034747, AK095955
- Consensus CDS
-
CCDS45411.1
- UniProtKB/TrEMBL
-
I3L1P1
- Related
- ENSP00000397958.2, ENST00000413364.6
- Conserved Domains (1) summary
-
- pfam10601
Location:91 → 126
- zf-LITAF-like; LITAF-like zinc ribbon domain
-
NM_004862.4 → NP_004853.2 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform 1
See identical proteins and their annotated locations for NP_004853.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AA625937, AB034747, BC101402
- Consensus CDS
-
CCDS32386.1
- UniProtKB/Swiss-Prot
- D3DUG1, G5E9K0, Q05DW0, Q99732, Q9C0L6
- UniProtKB/TrEMBL
-
I3L3U8
- Related
- ENSP00000340118.5, ENST00000339430.9
- Conserved Domains (1) summary
-
- pfam10601
Location:91 → 157
- zf-LITAF-like; LITAF-like zinc ribbon domain
RNA
-
NR_024320.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) has an alternate 5' exon, as compared to variant 1. The alternate 5' exon includes an upstream AUG codon, which results in an upstream ORF, and the transcript is a nonsense-mediated mRNA decay (NMD) candidate. Therefore, this variant is unlikely to make a functional protein.
- Source sequence(s)
-
AA625937, AB034747, BI858484, BX537543
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
11547722..11640317 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047434928.1 → XP_047290884.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_047434929.1 → XP_047290885.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_047434927.1 → XP_047290883.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_011522754.4 → XP_011521056.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
- Conserved Domains (1) summary
-
- pfam10601
Location:121 → 189
- zf-LITAF-like; LITAF-like zinc ribbon domain
-
XM_047434926.1 → XP_047290882.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_006720982.4 → XP_006721045.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X2
See identical proteins and their annotated locations for XP_006721045.1
- UniProtKB/Swiss-Prot
- D3DUG1, G5E9K0, Q05DW0, Q99732, Q9C0L6
- UniProtKB/TrEMBL
-
I3L3U8
- Related
- ENSP00000459138.1, ENST00000570904.5
- Conserved Domains (1) summary
-
- pfam10601
Location:91 → 157
- zf-LITAF-like; LITAF-like zinc ribbon domain
-
XM_006720984.5 → XP_006721047.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X2
See identical proteins and their annotated locations for XP_006721047.1
- UniProtKB/Swiss-Prot
- D3DUG1, G5E9K0, Q05DW0, Q99732, Q9C0L6
- UniProtKB/TrEMBL
-
I3L3U8
- Conserved Domains (1) summary
-
- pfam10601
Location:91 → 157
- zf-LITAF-like; LITAF-like zinc ribbon domain
-
XM_006720983.5 → XP_006721046.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X2
See identical proteins and their annotated locations for XP_006721046.1
- UniProtKB/Swiss-Prot
- D3DUG1, G5E9K0, Q05DW0, Q99732, Q9C0L6
- UniProtKB/TrEMBL
-
I3L3U8
- Related
- ENSP00000459533.1, ENST00000571688.6
- Conserved Domains (1) summary
-
- pfam10601
Location:91 → 157
- zf-LITAF-like; LITAF-like zinc ribbon domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
11583827..11676644 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054314440.1 → XP_054170415.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_054314441.1 → XP_054170416.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_054314439.1 → XP_054170414.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X1
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_054314442.1 → XP_054170417.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X2
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_054314443.1 → XP_054170418.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X2
- UniProtKB/TrEMBL
-
I3L3U8
-
XM_054314444.1 → XP_054170419.1 lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform X2
- UniProtKB/TrEMBL
-
I3L3U8