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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029859.1 RefSeqGene
- Range
-
5051..112783
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001113546.2 → NP_001107018.1 LIM domain and actin-binding protein 1 isoform 1
See identical proteins and their annotated locations for NP_001107018.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AB209512, AL136911, BC110815, BP281423
- Consensus CDS
-
CCDS44877.1
- UniProtKB/TrEMBL
-
Q53GG0
- Related
- ENSP00000378400.3, ENST00000394943.7
- Conserved Domains (1) summary
-
- cd09485
Location:391 → 443
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001113547.2 → NP_001107019.1 LIM domain and actin-binding protein 1 isoform 3
See identical proteins and their annotated locations for NP_001107019.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs at the 5' end compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and an isoform (3, also known as EPLIN-alpha) with a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AF198455, AL136911, BC110815, DA738195
- Consensus CDS
-
CCDS55826.1
- UniProtKB/TrEMBL
-
F8VQE1
- Related
- ENSP00000448779.1, ENST00000552783.5
- Conserved Domains (1) summary
-
- cd09485
Location:231 → 283
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001243775.2 → NP_001230704.1 LIM domain and actin-binding protein 1 isoform 4
See identical proteins and their annotated locations for NP_001230704.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs at the 5' end, and uses an alternate in-frame acceptor splice site at an internal coding exon compared to variant 1. This results in translation initiation from an in-frame downstream AUG, and an isoform (4) with a shorter N-terminus and lacking an internal aa compared to isoform 1.
- Source sequence(s)
-
AC008147, AC139016
- Consensus CDS
-
CCDS58230.1
- UniProtKB/TrEMBL
- B3KTW2, F8VS07
- Related
- ENSP00000448706.1, ENST00000547825.5
- Conserved Domains (1) summary
-
- cd09485
Location:88 → 140
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394886.1 → NP_001381815.1 LIM domain and actin-binding protein 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- Consensus CDS
-
CCDS44877.1
- UniProtKB/TrEMBL
-
Q53GG0
- Conserved Domains (1) summary
-
- cd09485
Location:391 → 443
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394887.1 → NP_001381816.1 LIM domain and actin-binding protein 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- Consensus CDS
-
CCDS8802.1
- UniProtKB/Swiss-Prot
- B2RB09, Q2TAN7, Q59FE8, Q9BVF2, Q9H8J1, Q9HBN5, Q9NX96, Q9NXC3, Q9NXU6, Q9P0H8, Q9UHB5, Q9UHB6
- UniProtKB/TrEMBL
-
Q53GG0
- Conserved Domains (1) summary
-
- cd09485
Location:390 → 442
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394888.1 → NP_001381817.1 LIM domain and actin-binding protein 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- Consensus CDS
-
CCDS8802.1
- UniProtKB/Swiss-Prot
- B2RB09, Q2TAN7, Q59FE8, Q9BVF2, Q9H8J1, Q9HBN5, Q9NX96, Q9NXC3, Q9NXU6, Q9P0H8, Q9UHB5, Q9UHB6
- UniProtKB/TrEMBL
-
Q53GG0
- Conserved Domains (1) summary
-
- cd09485
Location:390 → 442
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394889.1 → NP_001381818.1 LIM domain and actin-binding protein 1 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- UniProtKB/TrEMBL
-
Q53GG0
- Conserved Domains (1) summary
-
- cd09485
Location:390 → 442
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394890.1 → NP_001381819.1 LIM domain and actin-binding protein 1 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- UniProtKB/TrEMBL
-
Q53GG0
- Conserved Domains (1) summary
-
- cd09485
Location:389 → 441
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394891.1 → NP_001381820.1 LIM domain and actin-binding protein 1 isoform 7
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- UniProtKB/TrEMBL
-
Q53GG0
- Conserved Domains (1) summary
-
- cd09485
Location:373 → 425
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394892.1 → NP_001381821.1 LIM domain and actin-binding protein 1 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- UniProtKB/TrEMBL
-
Q53GG0
- Conserved Domains (1) summary
-
- cd09485
Location:313 → 365
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_001394893.1 → NP_001381822.1 LIM domain and actin-binding protein 1 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC008147, AC139016
- UniProtKB/TrEMBL
-
F8VQE1
- Conserved Domains (1) summary
-
- cd09485
Location:299 → 351
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
-
NM_016357.5 → NP_057441.1 LIM domain and actin-binding protein 1 isoform 2
See identical proteins and their annotated locations for NP_057441.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame acceptor splice site at an internal coding exon compared to variant 1. This results in an isoform (2, also known as EPLIN-beta) that is 1 aa shorter than isoform 1.
- Source sequence(s)
-
AL136911, BC110815, BP281423
- Consensus CDS
-
CCDS8802.1
- UniProtKB/Swiss-Prot
- B2RB09, Q2TAN7, Q59FE8, Q9BVF2, Q9H8J1, Q9HBN5, Q9NX96, Q9NXC3, Q9NXU6, Q9P0H8, Q9UHB5, Q9UHB6
- UniProtKB/TrEMBL
-
Q53GG0
- Related
- ENSP00000340184.4, ENST00000341247.9
- Conserved Domains (1) summary
-
- cd09485
Location:390 → 442
- LIM_Eplin_alpha_beta; The Lim domain of Epithelial Protein Lost in Neoplasm (Eplin)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
50175788..50283520 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047428969.1 → XP_047284925.1 LIM domain and actin-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
B4DN52
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
50138878..50246629 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)