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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001313712.1 → NP_001300641.1 nuclear autoantigen Sp-100 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks multiple 3' coding exons and extends past a splice site used in variant 1, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) has a distinct, shorter C-terminus than isoform 1.
- Source sequence(s)
-
AA162577, AC147806, AC161342, AK080004, U83630
- Consensus CDS
-
CCDS83568.1
- UniProtKB/Swiss-Prot
- E9PY02, O35892, O35897, O88392, O88395
- UniProtKB/TrEMBL
-
Q4FK53
- Related
- ENSMUSP00000118481.2, ENSMUST00000155094.8
- Conserved Domains (2) summary
-
- pfam01342
Location:383 → 458
- SAND; SAND domain
- pfam03172
Location:24 → 116
- Sp100; Sp100 domain
-
NM_001313713.1 → NP_001300642.1 nuclear autoantigen Sp-100 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an internal in-frame exon and lacks multiple 3' coding exons and extends past a splice site used in variant 1, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
- Source sequence(s)
-
AA162577, AC147806, AK152348, U83636
- Consensus CDS
-
CCDS83569.1
- UniProtKB/TrEMBL
- Q3U876, Q6NTA3
- Related
- ENSMUSP00000116942.2, ENSMUST00000147552.8
- Conserved Domains (2) summary
-
- pfam01342
Location:365 → 440
- SAND; SAND domain
- pfam03172
Location:24 → 116
- Sp100; Sp100 domain
-
NM_001313714.1 → NP_001300643.1 nuclear autoantigen Sp-100 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks multiple 3' coding exons and contains an alternate 3' terminal exon, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (4) has a distinct, shorter C-terminus than isoform 1.
- Source sequence(s)
-
AC147806, AK146054
- Consensus CDS
-
CCDS83567.1
- UniProtKB/TrEMBL
- E9Q4Y0, Q3UKD8, Q8C9H3
- Related
- ENSMUSP00000051705.9, ENSMUST00000054279.15
- Conserved Domains (1) summary
-
- pfam03172
Location:24 → 116
- Sp100; Sp100 domain
-
NM_001372231.1 → NP_001359160.1 nuclear autoantigen Sp-100 isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) represents the longest variant and encodes the longest isoform (5).
- Source sequence(s)
-
AC147806, AC161342
- Conserved Domains (4) summary
-
- cd05501
Location:552 → 652
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:484 → 525
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:385 → 458
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
NM_001372232.1 → NP_001359161.1 nuclear autoantigen Sp-100 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC147806, AC161342
- Conserved Domains (4) summary
-
- cd05501
Location:527 → 627
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:459 → 500
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:360 → 433
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
NM_013673.4 → NP_038701.2 nuclear autoantigen Sp-100 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) lacks an alternate in-frame segment compared to variant 5. The resulting isoform (1) has the same N- and C-termini but is shorter compared to isoform 5.
- Source sequence(s)
-
AA277101, AC147806, AK083304, AV284523
- Consensus CDS
-
CCDS35639.1
- UniProtKB/TrEMBL
- E9QA05, Q8C405
- Related
- ENSMUSP00000066399.5, ENSMUST00000066427.11
- Conserved Domains (3) summary
-
- cd05501
Location:474 → 574
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- pfam01342
Location:383 → 458
- SAND; SAND domain
- pfam03172
Location:24 → 116
- Sp100; Sp100 domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000067.7 Reference GRCm39 C57BL/6J
- Range
-
85577683..85637719
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006529283.5 → XP_006529346.2 nuclear autoantigen Sp-100 isoform X4
- Conserved Domains (4) summary
-
- cd05501
Location:533 → 633
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:465 → 506
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:366 → 439
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
XM_036163002.1 → XP_036018895.1 nuclear autoantigen Sp-100 isoform X6
- Conserved Domains (4) summary
-
- cd05501
Location:508 → 608
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:440 → 481
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:339 → 414
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
XM_017319442.3 → XP_017174931.1 nuclear autoantigen Sp-100 isoform X2
- Conserved Domains (4) summary
-
- cd05501
Location:551 → 651
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:483 → 524
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:385 → 458
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
XM_006529281.5 → XP_006529344.2 nuclear autoantigen Sp-100 isoform X1
- Conserved Domains (4) summary
-
- cd05501
Location:551 → 651
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:484 → 524
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:385 → 458
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
XM_006529282.5 → XP_006529345.2 nuclear autoantigen Sp-100 isoform X3
- Conserved Domains (4) summary
-
- cd05501
Location:534 → 634
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:466 → 507
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:367 → 440
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
XM_006529286.5 → XP_006529349.2 nuclear autoantigen Sp-100 isoform X5
- Conserved Domains (4) summary
-
- cd05501
Location:509 → 609
- Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
- cd15626
Location:441 → 482
- PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
- pfam01342
Location:342 → 415
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
XM_017319443.3 → XP_017174932.1 nuclear autoantigen Sp-100 isoform X8
- UniProtKB/TrEMBL
-
E9QA05
- Conserved Domains (3) summary
-
- pfam01342
Location:385 → 458
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
- cl02556
Location:469 → 501
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
-
XM_011247950.4 → XP_011246252.2 nuclear autoantigen Sp-100 isoform X9
- UniProtKB/TrEMBL
-
Q4FK53
- Conserved Domains (2) summary
-
- pfam01342
Location:385 → 458
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
-
XM_006529288.5 → XP_006529351.2 nuclear autoantigen Sp-100 isoform X7
- UniProtKB/TrEMBL
-
E9QA05
- Related
- ENSMUSP00000122670.2, ENSMUST00000153574.8
- Conserved Domains (3) summary
-
- pfam01342
Location:385 → 458
- SAND; SAND domain
- pfam03172
Location:23 → 119
- HSR; HSR domain
- cl02556
Location:470 → 502
- Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.