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    FLJ32255 uncharacterized LOC643977 [ Homo sapiens (human) ]

    Gene ID: 643977, updated on 10-Dec-2024

    Summary

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    Gene symbol
    FLJ32255
    Gene description
    uncharacterized LOC643977
    See related
    Ensembl:ENSG00000177738
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in spleen (RPKM 8.2), lymph node (RPKM 6.6) and 20 other tissues See more
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    Genomic context

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    See FLJ32255 in Genome Data Viewer
    Location:
    5p12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (42985398..42993333, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (43237768..43245704, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (42985500..42993435, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:42950525-42951724 Neighboring gene uncharacterized LOC105374745 Neighboring gene PRELI domain containing 3B pseudogene 7 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:42980851-42981676 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:42981677-42982502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22516 Neighboring gene uncharacterized LOC105374746 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22517 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22518 Neighboring gene Sharpr-MPRA regulatory region 2050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43000051-43000552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43000553-43001052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:43007431-43008283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43010287-43010787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22521 Neighboring gene ANXA2R overlapping transcript 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43018214-43018736 Neighboring gene uncharacterized LOC105374748 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22523 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43033815-43034354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43034355-43034892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:43039303-43039843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43042769-43043306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:43043307-43043842 Neighboring gene ANXA2R antisense RNA 1 Neighboring gene annexin A2 receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Clone Names

    • FLJ32255

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104643.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008875
      Related
      ENST00000657195.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      42985398..42993333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      43237768..43245704 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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