U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    glaH glutarate dioxygenase GlaH [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948076, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    glaH
    Official Full Name
    glutarate dioxygenase GlaH
    Primary source
    ECOCYC:G7394
    Locus tag
    b2659
    See related
    ASAP:ABE-0008754
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    csi-12; csiD; ECK2653; ygaT
    Summary
    RpoS, cAMP-CRP, HN-S and Lrp regulons. [More information is available at EcoGene: EG13523]. CsiD is the product of a gene induced by carbon starvation . [More information is available at EcoCyc: G7394].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2788985..2789962)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene pseudo Neighboring gene L-2-hydroxyglutarate dehydrogenase Neighboring gene succinate-semialdehyde dehydrogenase (NADP(+)) GabD

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A mixture of fortunes: the curious determination of the structure of Escherichia coli BL21 Gab protein. Lohkamp B, et al. Acta Crystallogr D Biol Crystallogr, 2008 Apr. PMID 18391407
    2. Structural genomics: a pipeline for providing structures for the biologist. Chance MR, et al. Protein Sci, 2002 Apr. PMID 11910018, Free PMC Article
    3. Identification and characterization of stationary phase-inducible genes in Escherichia coli. Weichart D, et al. Mol Microbiol, 1993 Oct. PMID 7934831
    4. An N-terminally truncated RpoS (sigma(S)) protein in Escherichia coli is active in vivo and exhibits normal environmental regulation even in the absence of rpoS transcriptional and translational control signals. Rajkumari K, et al. J Bacteriol, 2002 Jun. PMID 12029032, Free PMC Article
    5. Role of activator site position and a distal UP-element half-site for sigma factor selectivity at a CRP/H-NS-activated sigma(s)-dependent promoter in Escherichia coli. Germer J, et al. Mol Microbiol, 2001 Aug. PMID 11532138

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: Molecular analysis of the regulation of csiD, a carbon starvation-inducible gene in Escherichia coli that is exclusively dependent on sigma s and requires activation by cAMP-CRP.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ferrous iron binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glutarate dioxygenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables glutarate dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables iron ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within L-lysine catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in L-lysine catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in L-lysine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to carbon starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    glutarate dioxygenase GlaH
    NP_417145.4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2788985..2789962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417145.4 glutarate dioxygenase GlaH [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417145.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6C9QHX2
      Conserved Domains (1) summary
      PRK02963
      Location:7 → 322
      PRK02963; carbon starvation induced protein CsiD
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.