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    hrpB RNA-dependent NTPase HrpB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944845, updated on 3-Dec-2024

    Summary

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    Official Symbol
    hrpB
    Official Full Name
    RNA-dependent NTPase HrpB
    Primary source
    ECOCYC:EG12329
    Locus tag
    b0148
    See related
    ASAP:ABE-0000510
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0147; yadO
    Summary
    HrpB was named based on its similarity to HrpA. [More information is available at EcoCyc: EG12329].
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    Genomic context

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    Sequence:
    NC_000913.3 (162105..164534)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene sugar fermentation stimulation protein A Neighboring gene RNA 2',3'-cyclic phosphodiesterase Neighboring gene PBP1Bgamma;peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcB Neighboring gene ferrichrome outer membrane transporter/phage receptor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of Escherichia coli DEAH/RHA helicase HrpB. Xin BG, et al. Biochem Biophys Res Commun, 2018 Sep 26. PMID 30190128
    2. Cloning and characterization of the hrpA gene in the terC region of Escherichia coli that is highly similar to the DEAH family RNA helicase genes of Saccharomyces cerevisiae. Moriya H, et al. Nucleic Acids Res, 1995 Feb 25. PMID 7899078, Free PMC Article
    3. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Fujita N, et al. Nucleic Acids Res, 1994 May 11. PMID 8202364, Free PMC Article
    4. Crystal Structure of the Escherichia coli DExH-Box NTPase HrpB. Pietrzyk-Brzezinska AJ, et al. Structure, 2018 Nov 6. PMID 30174149
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent H2AZ histone chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent H3-H4 histone complex chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chromatin extrusion motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cohesin loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonucleoside triphosphate phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables single-stranded RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin looping IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA-dependent NTPase HrpB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      162105..164534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414690.4 RNA-dependent NTPase HrpB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414690.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FPV4
      Conserved Domains (1) summary
      PRK11664
      Location:1 → 809
      PRK11664; ATP-dependent RNA helicase HrpB; Provisional
    Nucleotide Protein
    Heading Accession and Version

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