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    ybcJ putative RNA-binding protein YbcJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945158, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybcJ
    Official Full Name
    putative RNA-binding protein YbcJ
    Primary source
    ECOCYC:EG12879
    Locus tag
    b0528
    See related
    ASAP:ABE-0001816
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0521
    Summary
    Ribosome-associated protein (Jiang, 2007). [More information is available at EcoGene: EG12879]. A solution structure of YbcJ has been determined. [More information is available at EcoCyc: EG12879].
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    Genomic context

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    Sequence:
    NC_000913.3 (556661..556873, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene cysteine--tRNA ligase Neighboring gene PF04307 family inner membrane protein YbcI Neighboring gene bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase Neighboring gene putative fimbrial protein SfmA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Purification, characterization, cloning, and amino acid sequence of the bifunctional enzyme 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase from Escherichia coli. D'Ari L, et al. J Biol Chem, 1991 Dec 15. PMID 1748668
    2. Gene targeting using randomly inserted group II introns (targetrons) recovered from an Escherichia coli gene disruption library. Yao J, et al. Nucleic Acids Res, 2005. PMID 15947133, Free PMC Article
    3. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
    4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    5. The solution structure of YbcJ from Escherichia coli reveals a recently discovered alphaL motif involved in RNA binding. Volpon L, et al. J Bacteriol, 2003 Jul. PMID 12837795, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation EXP
    Inferred from Experiment
    more info
    		 PubMed 
    acts_upstream_of_or_within translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative RNA-binding protein YbcJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      556661..556873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415061.2 putative RNA-binding protein YbcJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415061.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A6KNQ6
      Conserved Domains (1) summary
      PRK11507
      Location:1 → 70
      PRK11507; ribosome-associated protein YbcJ
    Nucleotide Protein
    Heading Accession and Version

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