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    ycaO ribosomal protein S12 methylthiotransferase accessory factor YcaO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945509, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycaO
    Official Full Name
    ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Primary source
    ECOCYC:G6468
    Locus tag
    b0905
    See related
    ASAP:ABE-0003081
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0896
    Summary
    Overexpression causes filamentous biofilm formation and reduced motility. [More information is available at EcoGene: EG13699].
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    Genomic context

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    Sequence:
    NC_000913.3 (954872..956632, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pyruvate formate-lyase Neighboring gene formate channel FocA Neighboring gene DUF421 domain-containing protein YcaP Neighboring gene phosphoserine/phosphohydroxythreonine aminotransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
    2. Discovery of a new ATP-binding motif involved in peptidic azoline biosynthesis. Dunbar KL, et al. Nat Chem Biol, 2014 Oct. PMID 25129028, Free PMC Article
    3. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP diphosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables magnesium ion binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal protein S12 methylthiotransferase accessory factor YcaO
    NP_415425.4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      954872..956632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415425.4 ribosomal protein S12 methylthiotransferase accessory factor YcaO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415425.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6PXB6
      Conserved Domains (2) summary
      TIGR00702
      Location:11 → 404
      TIGR00702; YcaO-type kinase domain
      pfam18381
      Location:407 → 582
      YcaO_C; YcaO cyclodehydratase C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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