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    ycfK protein StfP [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945726, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycfK
    Official Full Name
    protein StfP
    Primary source
    ECOCYC:EG12877
    Locus tag
    b1154
    See related
    ASAP:ABE-0003876
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1140; stfP
    Summary
    The first 96 codons of StfP encode the shared Stf constant region that is fused to the StfE' variable region in the P-element P(-) orientation (Plasterk, 1985; Mehta, 2004). [More information is available at EcoGene: EG12877].
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    Genomic context

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    Sequence:
    NC_000913.3 (1207501..1208130)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene IPR020297 domain-containing protein YmfR Neighboring gene protein BeeE Neighboring gene pseudo Neighboring gene DUF2313 domain-containing protein YmfQ Neighboring gene putative tail fiber assembly protein TfaP Neighboring gene putative tail fiber assembly protein TfaE Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The invertible P-DNA segment in the chromosome of Escherichia coli. Plasterk RH, et al. EMBO J, 1985 Jan. PMID 3894006, Free PMC Article
    2. Analysis of the lambdoid prophage element e14 in the E. coli K-12 genome. Mehta P, et al. BMC Microbiol, 2004 Jan 20. PMID 14733619, Free PMC Article
    3. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    protein StfP

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1207501..1208130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415672.1 protein StfP [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415672.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P45581
    Nucleotide Protein
    Heading Accession and Version

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