U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yddM DNA-binding transcriptional regulator YddM [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946040, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yddM
    Official Full Name
    DNA-binding transcriptional regulator YddM
    Primary source
    ECOCYC:G6774
    Locus tag
    b1477
    See related
    ASAP:ABE-0004925
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1471
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1552398..1552682, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene formate dehydrogenase N subunit alpha Neighboring gene formate dehydrogenase N subunit beta Neighboring gene formate dehydrogenase N subunit gamma Neighboring gene ethanol dehydrogenase/alcohol dehydrogenase Neighboring gene malate dehydrogenase (oxaloacetate-decarboxylating)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655. Gao Y, et al. Nucleic Acids Res, 2018 Nov 16. PMID 30137486, Free PMC Article
    2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription EXP
    Inferred from Experiment
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DNA-binding transcriptional regulator YddM

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1552398..1552682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415994.4 DNA-binding transcriptional regulator YddM [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415994.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5ZMP7
      Conserved Domains (1) summary
      TIGR02607
      Location:5 → 81
      antidote_HigA; addiction module antidote protein, HigA family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.