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    ydeI BOF family protein YdeI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946068, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydeI
    Official Full Name
    BOF family protein YdeI
    Primary source
    ECOCYC:EG11644
    Locus tag
    b1536
    See related
    ASAP:ABE-0005127
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1529
    Summary
    First 19 aa are predicted to be a type I signal peptide. ydeI and ygiW are paralogs. [More information is available at EcoGene: EG11644].
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    Genomic context

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    Sequence:
    NC_000913.3 (1624105..1624497, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein MgtT Neighboring gene ncRNA Neighboring gene diguanylate cyclase DgcZ Neighboring gene PF02464 family protein YdeJ Neighboring gene peptidyl-dipeptidase Dcp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli. Cohen SP, et al. J Bacteriol, 1993 Mar. PMID 8383113, Free PMC Article
    2. Climbing the protein ladder. Dovichi NJ. Nat Biotechnol, 2004 Oct. PMID 15470461
    3. Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis. Zhong H, et al. Nat Biotechnol, 2004 Oct. PMID 15361881
    4. BOF: a novel family of bacterial OB-fold proteins. Ginalski K, et al. FEBS Lett, 2004 Jun 4. PMID 15178340
    5. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hydrogen peroxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within single-species biofilm formation on inanimate substrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BOF family protein YdeI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1624105..1624497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416054.1 BOF family protein YdeI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416054.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A793CC42
      Conserved Domains (1) summary
      PRK10053
      Location:1 → 130
      PRK10053; YdeI family stress tolerance OB fold protein
    Nucleotide Protein
    Heading Accession and Version

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