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    Clec2l C-type lectin domain family 2, member L [ Mus musculus (house mouse) ]

    Gene ID: 665180, updated on 9-Dec-2024

    Summary

    Official Symbol
    Clec2lprovided by MGI
    Official Full Name
    C-type lectin domain family 2, member Lprovided by MGI
    Primary source
    MGI:MGI:2141402
    See related
    Ensembl:ENSMUSG00000079598 AllianceGenome:MGI:2141402
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1064
    Summary
    Predicted to enable carbohydrate binding activity. Predicted to be located in membrane. Orthologous to human CLEC2L (C-type lectin domain family 2 member L). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 56.4), cortex adult (RPKM 26.5) and 7 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Clec2l in Genome Data Viewer
    Location:
    6 B1; 6 17.85 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (38640004..38657800)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (38663069..38680865)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2782 Neighboring gene kinesin family member 11 pseudogene Neighboring gene LUC7-like 2 (S. cerevisiae) Neighboring gene killer cell lectin-like receptor subfamily G, member 2 Neighboring gene Clec2l Hedgehog-responsive enhancer Neighboring gene homeodomain interacting protein kinase 2 Neighboring gene STARR-positive B cell enhancer mm9_chr6:38676623-38676923 Neighboring gene STARR-positive B cell enhancer mm9_chr6:38677325-38677625 Neighboring gene predicted gene, 53285 Neighboring gene RIKEN cDNA 4930502C15 gene Neighboring gene Hipk2R16 erythroid cis-regulatory module

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    C-type lectin domain family 2 member L
    Names
    C-type lectin domain family, member L

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101507.1NP_001094977.1  C-type lectin domain family 2 member L

      See identical proteins and their annotated locations for NP_001094977.1

      Status: VALIDATED

      Source sequence(s)
      AI627165, AI845592, CJ059176, CJ059317, CJ060465, CJ060631
      Consensus CDS
      CCDS57419.1
      UniProtKB/Swiss-Prot
      P0C7M9
      Related
      ENSMUSP00000110524.4, ENSMUST00000114874.5
      Conserved Domains (1) summary
      cd03593
      Location:97207
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      38640004..38657800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)