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    1810030O07Rik RIKEN cDNA 1810030O07 gene [ Mus musculus (house mouse) ]

    Gene ID: 69155, updated on 9-Dec-2024

    Summary

    Official Symbol
    1810030O07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1810030O07 geneprovided by MGI
    Primary source
    MGI:MGI:1916405
    See related
    Ensembl:ENSMUSG00000044148 AllianceGenome:MGI:1916405
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human CXorf38 (chromosome X open reading frame 38). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in CNS E14 (RPKM 5.2), bladder adult (RPKM 5.0) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See 1810030O07Rik in Genome Data Viewer
    Location:
    X A1.1; X 7.5 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (12521118..12540175, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (12654879..12673936, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene nucleolar protein 56 pseudogene Neighboring gene STARR-seq mESC enhancer starr_46759 Neighboring gene predicted pseudogene 4984 Neighboring gene mediator complex subunit 14 Neighboring gene predicted gene, 52422 Neighboring gene STARR-seq mESC enhancer starr_46762 Neighboring gene predicted gene 14634

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein CXorf38 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175141.6NP_780350.1  uncharacterized protein CXorf38 homolog

      See identical proteins and their annotated locations for NP_780350.1

      Status: VALIDATED

      Source sequence(s)
      BC137660, BX511770
      Consensus CDS
      CCDS30024.1
      UniProtKB/Swiss-Prot
      Q3TFM9, Q8C5K5, Q8CF12
      UniProtKB/TrEMBL
      A2BDN9
      Related
      ENSMUSP00000059095.7, ENSMUST00000060108.7
      Conserved Domains (1) summary
      pfam15112
      Location:9317
      DUF4559; Domain of unknown function (DUF4559)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      12521118..12540175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527698.4XP_006527761.1  uncharacterized protein CXorf38 homolog isoform X1

      See identical proteins and their annotated locations for XP_006527761.1

      UniProtKB/Swiss-Prot
      Q3TFM9, Q8C5K5, Q8CF12
      UniProtKB/TrEMBL
      A2BDN9
      Conserved Domains (1) summary
      pfam15112
      Location:9317
      DUF4559; Domain of unknown function (DUF4559)