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    E230025N22Rik Riken cDNA E230025N22 gene [ Mus musculus (house mouse) ]

    Gene ID: 240216, updated on 27-Nov-2024

    Summary

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    Official Symbol
    E230025N22Rikprovided by MGI
    Official Full Name
    Riken cDNA E230025N22 geneprovided by MGI
    Primary source
    MGI:MGI:3687212
    See related
    Ensembl:ENSMUSG00000044719 AllianceGenome:MGI:3687212
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG240216
    Expression
    Biased expression in colon adult (RPKM 1.4), large intestine adult (RPKM 0.2) and 5 other tissues See more
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    Genomic context

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    See E230025N22Rik in Genome Data Viewer
    Location:
    18 B2; 18 19.46 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (36817976..36829162, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (36684923..36696091, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5653 Neighboring gene steroid receptor RNA activator 1 Neighboring gene amyloid beta precursor protein binding family B member 3 Neighboring gene STARR-positive B cell enhancer ABC_E8708 Neighboring gene solute carrier family 35, member A4 Neighboring gene STARR-seq mESC enhancer starr_44297 Neighboring gene predicted gene, 41699 Neighboring gene CD14 antigen

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A global genomic transcriptional code associated with CNS-expressed genes. Bailey PJ, et al. Exp Cell Res, 2006 Oct 1. PMID 16919269
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC240216

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172831.2 → NP_766419.2  uncharacterized protein LOC240216

      See identical proteins and their annotated locations for NP_766419.2

      Status: VALIDATED

      Source sequence(s)
      AC027740, AK087618, BB551085, BB666007
      Consensus CDS
      CCDS37771.1
      UniProtKB/TrEMBL
      G5E8S3, Q8BU60
      Related
      ENSMUSP00000111346.2, ENSMUST00000115682.2
      Conserved Domains (1) summary
      pfam00225
      Location:4 → 106
      Kinesin; Kinesin motor domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      36817976..36829162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317899.2 → XP_017173388.1  uncharacterized protein LOC240216 isoform X3

      UniProtKB/TrEMBL
      Q8BU60

    2. XM_011246923.3 → XP_011245225.1  uncharacterized protein LOC240216 isoform X2

      See identical proteins and their annotated locations for XP_011245225.1

      UniProtKB/TrEMBL
      G5E8S3, Q8BU60
      Conserved Domains (1) summary
      pfam00225
      Location:4 → 106
      Kinesin; Kinesin motor domain

    3. XM_017317898.2 → XP_017173387.1  uncharacterized protein LOC240216 isoform X1

      UniProtKB/TrEMBL
      Q8BU60
      Conserved Domains (1) summary
      pfam00225
      Location:4 → 106
      Kinesin; Kinesin motor domain

    4. XM_017317900.3 → XP_017173389.1  uncharacterized protein LOC240216 isoform X4

      Conserved Domains (1) summary
      pfam00225
      Location:4 → 106
      Kinesin; Kinesin motor domain

    5. XM_030250453.2 → XP_030106313.1  uncharacterized protein LOC240216 isoform X5

      Conserved Domains (1) summary
      pfam00225
      Location:4 → 106
      Kinesin; Kinesin motor domain
    Nucleotide Protein Strain
    Heading Accession and Version

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