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    Platr10 pluripotency associated transcript 10 [ Mus musculus (house mouse) ]

    Gene ID: 69193, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Platr10provided by MGI
    Official Full Name
    pluripotency associated transcript 10provided by MGI
    Primary source
    MGI:MGI:1916443
    See related
    Ensembl:ENSMUSG00000099370 AllianceGenome:MGI:1916443
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2410007B07Rik
    Summary
    Is active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Platr10 in Genome Data Viewer
    Location:
    3; 3 E3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (75554748..75563038, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (75647441..75655731, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene programmed cell death 10 Neighboring gene STARR-positive B cell enhancer ABC_E2071 Neighboring gene serine (or cysteine) peptidase inhibitor, clade I, member 1 Neighboring gene STARR-seq mESC enhancer starr_07971 Neighboring gene STARR-positive B cell enhancer ABC_E9553 Neighboring gene STARR-positive B cell enhancer mm9_chr3:75547372-75547672 Neighboring gene predicted gene, 25846 Neighboring gene STARR-seq mESC enhancer starr_07973 Neighboring gene STARR-positive B cell enhancer ABC_E11194 Neighboring gene golgi integral membrane protein 4 Neighboring gene STARR-positive B cell enhancer ABC_E1260

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Bergmann JH, et al. Genome Res, 2015 Sep. PMID 26048247, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040539.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC140430, AK010436
      Related
      ENSMUST00000190602.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      75554748..75563038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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