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    Ccdc9b coiled-coil domain containing 9B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311323, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ccdc9bprovided by RGD
    Official Full Name
    coiled-coil domain containing 9Bprovided by RGD
    Primary source
    RGD:1565536
    See related
    EnsemblRapid:ENSRNOG00000028910 AllianceGenome:RGD:1565536
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565536
    Summary
    Orthologous to human CCDC9B (coiled-coil domain containing 9B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 262.3), Lung (RPKM 187.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc9b in Genome Data Viewer
    Location:
    3q35
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (126190039..126198931, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (105736120..105745039, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (110548238..110557096, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548045 Neighboring gene InaF motif containing 2 Neighboring gene proline, histidine and glycine rich 1 Neighboring gene dispatched RND transporter family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 9B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      126190039..126198931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056985389.2 → XP_056841369.1  coiled-coil domain-containing protein 9B isoform X5

    2. XM_063285305.1 → XP_063141375.1  coiled-coil domain-containing protein 9B isoform X3

    3. XM_056985387.2 → XP_056841367.1  coiled-coil domain-containing protein 9B isoform X1

      Related
      ENSRNOP00000070443.3, ENSRNOT00000092158.3

    4. XM_056985388.2 → XP_056841368.1  coiled-coil domain-containing protein 9B isoform X2

    5. XM_063285306.1 → XP_063141376.1  coiled-coil domain-containing protein 9B isoform X4

    RNA

    1. XR_010065344.1 RNA Sequence

    2. XR_010065345.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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