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    Glipr1 GLI pathogenesis-related 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299783, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Glipr1provided by RGD
    Official Full Name
    GLI pathogenesis-related 1provided by RGD
    Primary source
    RGD:1305978
    See related
    EnsemblRapid:ENSRNOG00000026644 AllianceGenome:RGD:1305978
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human GLIPR1 (GLI pathogenesis related 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 375.8), Thymus (RPKM 330.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Glipr1 in Genome Data Viewer
    Location:
    7q22
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (49373579..49399190, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (47487342..47498974, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (54767828..54778823, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108351449 Neighboring gene uncharacterized LOC120093587 Neighboring gene uncharacterized LOC108351450 Neighboring gene KRR1, small subunit processome component homolog Neighboring gene GLIPR1 like 2 Neighboring gene GLIPR1 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC108941

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    glioma pathogenesis-related protein 1
    Names
    GLI pathogenesis-related 1 (glioma)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011987.1 → NP_001011987.1  glioma pathogenesis-related protein 1 precursor

      See identical proteins and their annotated locations for NP_001011987.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089858
      UniProtKB/TrEMBL
      A0A8I5ZNI3, A6IGI2, F7EQZ0, Q5FVN7
      Related
      ENSRNOP00000005399.4, ENSRNOT00000005399.9
      Conserved Domains (1) summary
      cl00133
      Location:32 → 168
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      49373579..49399190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078708.2 → XP_038934636.1  glioma pathogenesis-related protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZNI3, A6IGI2, F7EQZ0, Q5FVN7
      Conserved Domains (1) summary
      cl00133
      Location:32 → 168
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

    2. XM_039078709.2 → XP_038934637.1  glioma pathogenesis-related protein 1 isoform X2

      Conserved Domains (1) summary
      cl00133
      Location:32 → 167
      CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

    RNA

    1. XR_010052953.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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