Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Snrnp27provided by RGD
Official Full Name: small nuclear ribonucleoprotein U4/U6.U5 subunit 27provided by RGD
Primary source: RGD:1310925
See related: EnsemblRapid:ENSRNOG00000065135 AllianceGenome:RGD:1310925
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Ry1; RGD1310925
Summary: Predicted to be involved in RNA splicing; germ cell development; and mRNA processing. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Muscle (RPKM 186.9), Heart (RPKM 169.1) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 4q34

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (120681054..120691343, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (119123676..119133234, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (118478075..118487633, complement)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

AI449063 (e-PCR)
- UniSTS:159529

RH131135 (e-PCR)
- UniSTS:214418

RH137261 (e-PCR)
- UniSTS:219349

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in RNA splicing	IEA Inferred from Electronic Annotation more info
involved_in germ cell development	IEA Inferred from Electronic Annotation more info
involved_in mRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U4/U6 x U5 tri-snRNP complex	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

Names: putative nucleic acid binding protein RY-1; small nuclear ribonucleoprotein 27 (U4/U6.U5); small nuclear ribonucleoprotein 27kDa (U4/U6.U5)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.