U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ankrd33b ankyrin repeat domain 33B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310200, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ankrd33bprovided by RGD
    Official Full Name
    ankyrin repeat domain 33Bprovided by RGD
    Primary source
    RGD:1564227
    See related
    EnsemblRapid:ENSRNOG00000010888 AllianceGenome:RGD:1564227
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564227
    Summary
    Orthologous to human ANKRD33B (ankyrin repeat domain 33B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 86.4), Lung (RPKM 68.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ankrd33b in Genome Data Viewer
    Location:
    2q23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (83988505..84070311, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (82277604..82359420, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (84361061..84436912, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120100757 Neighboring gene death-associated protein Neighboring gene uncharacterized LOC134485603 Neighboring gene uncharacterized LOC102553736 Neighboring gene rhophilin associated tail protein 1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    ankyrin repeat domain-containing protein 33B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191565.1 → NP_001178494.1  ankyrin repeat domain-containing protein 33B

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A6JMY9, D3ZTU7
      Related
      ENSRNOP00000056322.1, ENSRNOT00000059565.5
      Conserved Domains (4) summary
      cd00204
      Location:112 → 239
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:121 → 216
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:81 → 136
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:116 → 148
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      83988505..84070311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102227.2 → XP_038958155.1  ankyrin repeat domain-containing protein 33B isoform X1

      Conserved Domains (1) summary
      cl39094
      Location:1 → 49
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_039102228.2 → XP_038958156.1  ankyrin repeat domain-containing protein 33B isoform X1

      Conserved Domains (1) summary
      cl39094
      Location:1 → 49
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_039102229.2 → XP_038958157.1  ankyrin repeat domain-containing protein 33B isoform X1

      Conserved Domains (1) summary
      cl39094
      Location:1 → 49
      Ank_2; Ankyrin repeats (3 copies)

    RNA

    1. XR_010063602.1 RNA Sequence

    2. XR_005500280.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.